PCI Non-Compliance Fees: What They Are, Why You Get Charged, and How to Stop Them

Written by Tyler DurbinJune 6, 2026
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If you see a line item like "PCI non-compliance fee" on your merchant statement, it usually means your processor or acquiring bank has marked your account as "not validated" for PCI DSS compliance. This is common for small businesses that are otherwise processing normally but have not completed the paperwork or scans their processor requires.

The good news: in most cases, you can stop the fees by completing the right PCI validation steps for your setup (SAQ type, quarterly scans if required, and an attestation). The bad news: if you ignore it, the fees tend to recur monthly and can add up, and a true data incident can get much more expensive.

What is a PCI non-compliance fee, and who actually charges it?

A PCI non-compliance fee is a monthly penalty your processor or acquiring bank adds when your merchant account is flagged as not meeting PCI validation requirements.

PCI DSS is not a law, but it is enforced through card brand rules and your merchant agreement. Card brands run compliance programs (for example, Mastercard's Site Data Protection program and Visa's AIS program) and require acquirers to track and report merchant compliance status. If your acquirer cannot validate your compliance, the processor often passes a penalty fee to you.

Important nuance: the PCI Security Standards Council publishes the standards and validation forms, but it does not bill merchants directly for non-compliance.

Why did my processor mark me non-compliant?

Usually, you get flagged for one of these reasons:

  • You did not submit an annual Self-Assessment Questionnaire (SAQ) in the processor's portal.
  • You submitted the wrong SAQ type for your acceptance method.
  • Your quarterly external vulnerability scans are missing (when scans are required for your environment).
  • Your attestation is missing or expired.
  • Your processor changed PCI vendors or portals, and your prior validation did not carry over.
  • You changed how you accept payments (for example, you added online payments, a virtual terminal, or stored cards), and your validation steps changed.

Mastercard explicitly states that merchants generally work through their acquirer for PCI validation, and that the acquirer manages compliance reporting to Mastercard. That is why your first call is typically your processor, not Mastercard.

Are PCI non-compliance fees the same as PCI compliance fees?

No. A "PCI compliance fee" is often a separate recurring charge processors add for access to a PCI portal, scanning tools, training, or support.

A PCI non-compliance fee is the penalty that shows up when you do not complete validation steps in the portal. Some providers charge both: a compliance program fee plus a non-compliance fee.

If you are seeing both, ask your processor to explain exactly what each line item covers and whether either one can be removed if you use a different PCI validation path (for example, submitting a compliant SAQ and scans without the add-on portal).

What PCI paperwork do most small businesses need to submit?

Most SMBs validate PCI DSS annually with:

1. A Self-Assessment Questionnaire (SAQ)

2. An Attestation of Compliance (AOC)

The PCI SSC publishes official SAQ and AOC templates. Your processor may have you fill them out inside a portal, but conceptually, you are completing an SAQ and attesting to the results.

Larger merchants, and some higher-risk setups, may require a third-party assessment resulting in a Report on Compliance (ROC), but most local businesses and typical ecommerce merchants will not.

Which SAQ type do I need (and why it matters for the fee)?

The SAQ type is based on how you accept cards and whether card data touches your systems.

If your setup is truly outsourced (for example, you use a hosted checkout page and do not handle card data on your servers), you may be eligible for a shorter SAQ. If you run payments through a virtual terminal, have payment software on a PC, or store card data, you can end up in SAQ D, which is longer.

Why it matters: processors often auto-flag "wrong SAQ" as non-compliant. So even if you completed "an SAQ", it might not satisfy the validation rules for your specific environment.

Practical examples:

  • A typical ecommerce merchant using a hosted payment page is often positioned for SAQ A, but it depends on eligibility.
  • A merchant whose website handles card entry on their own checkout form (even if they use a gateway) may have more obligations.
  • A merchant keying cards into a browser-based virtual terminal has different validation requirements than a card-present retailer.

If you are not sure, ask your processor: "Which SAQ type does your compliance program require for my MID, and what specific evidence is missing?"

Do I need quarterly ASV scans to stop the fee?

Sometimes.

Quarterly external vulnerability scans (by an Approved Scanning Vendor, or ASV) are required when you have internet-facing systems in scope for PCI DSS. Some merchants never need scans because their payments are fully outsourced. Other merchants do need scans, especially if they host payment pages, have systems exposed to the internet that are connected to the cardholder data environment, or have a more complex setup.

Processors sometimes treat scans as a default requirement in their portal until you prove you are eligible for an SAQ type that does not require them.

The fastest way to get clarity is to ask your processor what exactly is missing:

  • SAQ submitted? (yes/no)
  • AOC signed? (yes/no)
  • Scan results uploaded for the last four quarters? (yes/no)

How much are PCI non-compliance fees, and how long do they last?

It varies by processor.

Many processors charge a monthly penalty until you complete validation. Some also charge a one-time "PCI non-compliance" setup fee when the account first gets flagged, or they back-bill for prior months.

The most important operational detail is that these fees are usually avoidable and stop once you are validated as compliant in the processor's system.

Can a processor raise my rates, hold funds, or terminate my account over PCI issues?

Potentially, yes.

Most of the time, a PCI non-compliance fee is the processor's way of applying pressure to complete validation steps. But PCI issues also relate to risk. If a processor believes your environment is storing card data improperly or is materially insecure, it can trigger deeper underwriting review.

If you are already dealing with funding holds or account reserves, read our guide on merchant account reserves and funding holds.

What should I do first when I see a PCI non-compliance fee?

First, confirm the trigger.

Call your processor and ask:

  • "What condition triggered non-compliant status for my merchant ID?"
  • "Which SAQ type is required for my setup?"
  • "Do you require quarterly ASV scans for my account?"
  • "What exact documents or portal steps do you need to mark me compliant?"
  • "Once I complete it, how long until the status updates and the fee stops?"

Second, check if the fee is a penalty for missing validation versus a separate PCI program fee.

Third, get the portal login and complete the steps.

If you have multiple locations or multiple MIDs, confirm which one is being charged.

How do I stop PCI non-compliance fees (step-by-step checklist)?

Here is a practical checklist most merchants can follow.

1) Identify your acceptance methods

  • Ecommerce only?
  • Card-present only?
  • MOTO or virtual terminal?
  • Do you store card-on-file?

2) Confirm your required SAQ type in writing

Your acquirer should be able to tell you which SAQ you must complete.

3) Complete the SAQ and sign the attestation

Fill out the SAQ and the attestation (AOC) as required by your provider.

4) Run and upload quarterly ASV scans if required

If scans are required, schedule them as recurring. If a scan fails, remediate and rescan until it passes.

5) Validate your service providers

PCI programs often expect you to maintain a list of service providers that touch card data and confirm they are compliant.

6) Confirm the compliance status update

After submission, ask your processor when the account will show as "compliant" in the portal and when fees will stop.

7) Ask about credits (optional)

Some processors will reverse recent penalties as a courtesy once you validate, especially if the fee was triggered by a portal change or a misunderstanding.

How do I avoid getting hit again next year?

Set reminders.

  • Put the annual SAQ renewal date on your calendar.
  • Set quarterly scan reminders if they apply.
  • Keep your contact email current with your processor, because PCI portals often send notices that get missed after a staff change.

Also, keep your payment acceptance model stable. Adding new channels (for example, adding an ecommerce checkout to a retail-only business) can change PCI scope and require a different SAQ.

What if my processor's PCI portal is confusing or feels like an upsell?

That is a common complaint.

Some processors bundle PCI validation with paid tools. Others offer a portal but do not provide much guidance.

If you feel stuck, you have two practical options:

  • Ask the processor for a plain-English list of what is missing for your MID.
  • Move to a provider that is more transparent about PCI validation, pricing, and support.

If you are evaluating providers anyway, you may also want to read our guide to interchange-plus vs flat rate pricing, since PCI fees often show up alongside other statement line items that are easy to miss.

FAQ

Is PCI DSS required for every business that accepts cards?

Yes. If you store, process, or transmit cardholder data, you have PCI DSS obligations. Most merchants validate annually via an SAQ and attestation through their acquirer.

Can I be PCI compliant if I use Stripe, Square, or PayPal?

You can still have PCI obligations even if your payment provider is compliant. Many merchants remain responsible for validating their own environment and completing the right SAQ for their setup.

Does completing an SAQ guarantee my processor will remove the fee?

Not always. It must be the correct SAQ type, and any required scans must be completed. Also, the status has to update in the processor's system.

What happens if I ignore the fee?

In many cases, the fee will recur monthly. More importantly, ignoring PCI validation can increase risk if you have a real security issue, and it can lead to additional scrutiny from the processor.

Will the card brands fine me directly?

Typically, penalties are applied through the acquiring chain. Merchants usually interact with their processor or acquiring bank for validation and fees.

Closing: fix the fee, then fix the statement

If you are getting hit with PCI non-compliance fees, the fastest path is to get your processor to tell you exactly what is missing, complete the correct SAQ and attestation, and confirm the portal status update.

You can apply for a merchant account through Easy Pay Direct or another processor that fits your model. Other options worth a look:

Written by 

Tyler Durbin